PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676716642
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family HB-other
Protein Properties Length: 354aa    MW: 39235.8 Da    PI: 8.2198
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676716642genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox14.37e-0536533855
               TS-HHHHHHHHHHHHHHH CS
   Homeobox 38 gLterqVkvWFqNrRake 55
                ++ +q+ +WFqNrR+  
  676716642 36 VVQFKQIWNWFQNRRYAL 53
               56779**********965 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-4158IPR009057Homeodomain-like
PROSITE profilePS500718.552156IPR001356Homeobox domain
SuperFamilySSF466894.15E-81057IPR009057Homeodomain-like
PfamPF167197.2E-31119220IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MEAILLQHNT AMPGRHILEA LAEKFSETVE RKGKIVVQFK QIWNWFQNRR YALRARGNKA  60
PGKLNVSSMP RGVDLTNPMR NVLQPSSGPK TTHMTGNLPV MTPAPSVPGV MRSGSDNSYL  120
EFEAKSARDG AWYDVQAFLA HRNLEIGDPE VQVRFAGFEV EEDEWINVKK HVRQRSLPCE  180
ASECVAVLAG DLVLCFQEGK DQALYFDAIV LDAQRRRHDP RPVRGWMLIS NLCFYLLAPF  240
GFMVWESEAN SSSLLPIWIS FPLSQQEIVP LRKICRRPET DYRLQQLHSA ANDFANSNQL  300
QKPAPDVAAK PPLSQSGASV PIVPPDVKDP SLSAASATPV QPSSNVATVP AGSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuv_A1e-341202794134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B1e-341202794134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B1e-341202794134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A1e-341202794134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B1e-341202794134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_A1e-341202794134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A1e-341202794134SHH1 SAWADEE
4iur_B1e-341202794134SHH1 SAWADEE
4iuq_A1e-341202794134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B1e-341202794134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0930420.0AY093042.1 Arabidopsis thaliana unknown protein (At3g18380) mRNA, complete cds.
GenBankBT0034280.0BT003428.1 Arabidopsis thaliana unknown protein (At3g18380) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001189923.10.0sequence-specific DNA binding transcription factor
SwissprotQ8RWJ70.0SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLR0G6A60.0R0G6A6_9BRAS; Uncharacterized protein
STRINGfgenesh2_kg.3__2039__AT3G18380.20.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73992437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.30.0sequence-specific DNA binding transcription factors;sequence-specific DNA binding